Index

_

__delitem__() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) __dict__ (ease4lmp.LammpsWriter attribute) __imul__() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) __init__() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) (ease4lmp.LammpsWriter method) (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.lammps_sectionwriter.LammpsImpropers method) (ease4lmp.lammps_sectionwriter.LammpsSpecialBonds method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) (ease4lmp.lammps_writer.LammpsWriter method) __module__ (ease4lmp.BondedAtoms attribute) (ease4lmp.LammpsWriter attribute) __weakref__ (ease4lmp.lammps_sectionwriter.LammpsAtoms attribute) (ease4lmp.LammpsWriter attribute) (ease4lmp.lammps_sectionwriter.LammpsSpecialBonds attribute) (ease4lmp.lammps_sectionwriter.LammpsTopology attribute) (ease4lmp.lammps_writer.LammpsWriter attribute)

A

add_bond() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) adjust_pbc_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method)

B

BondedAtoms (class in ease4lmp) (class in ease4lmp.bonded_atoms)

C

change_max_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) create_atoms_from_data() (in module ease4lmp) (in module ease4lmp.bonded_atoms) create_atoms_from_json() (in module ease4lmp) (in module ease4lmp.bonded_atoms) create_atoms_from_molecule() (in module ease4lmp) (in module ease4lmp.bonded_atoms) create_topology() (in module ease4lmp.lammps_sectionwriter)

E

ease4lmp (module) ease4lmp.bonded_atoms (module) ease4lmp.lammps_dataformats (module) ease4lmp.lammps_reader (module) ease4lmp.lammps_sectionwriter (module) ease4lmp.lammps_units (module) ease4lmp.lammps_writer (module) extend() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) ExtendedPrism (class in ease4lmp.lammps_writer)

G

get_angle_patterns() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) get_bond_patterns() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) get_bonded_angles() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_bonded_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_bonded_dihedrals() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_bonded_impropers() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_bonds_per_atom() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) get_dihedral_patterns() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) get_improper_patterns() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) get_maximum_per_atom() (ease4lmp.lammps_sectionwriter.LammpsBonds method) (ease4lmp.lammps_sectionwriter.LammpsSpecialBonds method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) get_num() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) get_num_type() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) get_required_datanames() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.LammpsWriter method) (ease4lmp.lammps_writer.LammpsWriter method) get_required_datanames_for_molecule() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) get_sequence_patterns() (ease4lmp.lammps_sectionwriter.LammpsImpropers method) (ease4lmp.LammpsWriter method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) (ease4lmp.lammps_writer.LammpsWriter method) get_types() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method)

L

LammpsAngles (class in ease4lmp.lammps_sectionwriter) LammpsAtoms (class in ease4lmp.lammps_sectionwriter) LammpsBonds (class in ease4lmp.lammps_sectionwriter) LammpsDihedrals (class in ease4lmp.lammps_sectionwriter) LammpsImpropers (class in ease4lmp.lammps_sectionwriter) LammpsSpecialBonds (class in ease4lmp.lammps_sectionwriter) LammpsTopology (class in ease4lmp.lammps_sectionwriter) LammpsWriter (class in ease4lmp) (class in ease4lmp.lammps_writer)

P

print_max_angles_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) print_max_bonds_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) print_max_dihedrals_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) print_max_impropers_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) print_max_specials_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) print_maximum_per_atom() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method)

R

read_angles() (in module ease4lmp) (in module ease4lmp.lammps_reader) read_atoms_from_data() (in module ease4lmp) (in module ease4lmp.lammps_reader) read_atoms_from_molecule() (in module ease4lmp) (in module ease4lmp.lammps_reader) read_bonds() (in module ease4lmp) (in module ease4lmp.lammps_reader) read_box() (in module ease4lmp.lammps_reader) read_dihedrals() (in module ease4lmp) (in module ease4lmp.lammps_reader) read_impropers() (in module ease4lmp) (in module ease4lmp.lammps_reader) remove_bond() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method)

S

set_angle_types() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_atom_data() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_bond_types() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) set_data() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) set_dihedral_types() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_improper_types() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_masses() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.LammpsWriter method) (ease4lmp.lammps_writer.LammpsWriter method) set_topology_types() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) set_types() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) shift_positions() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) sort_bonds() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method)

T

transform_to_lammps() (ease4lmp.lammps_writer.ExtendedPrism method)

W

wrap() (ease4lmp.bonded_atoms.BondedAtoms method) (ease4lmp.BondedAtoms method) write_lammps_data() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) write_lammps_molecule() (ease4lmp.lammps_writer.LammpsWriter method) (ease4lmp.LammpsWriter method) write_lines() (ease4lmp.lammps_sectionwriter.LammpsAtoms method) (ease4lmp.lammps_sectionwriter.LammpsSpecialBonds method) (ease4lmp.lammps_sectionwriter.LammpsTopology method) write_lines_for_molecule() (ease4lmp.lammps_sectionwriter.LammpsAtoms method)